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[Arabidopsis] How to identify a specific metabolic pathway froma list of genes.

[Arabidopsis] How to identify a specific metabolic pathway froma list of genes. - Arabidopsis and Plant Biology

[Arabidopsis] How to identify a specific metabolic pathway froma list of genes. - Discuss Arabidopsis and Plant Biology Research.


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Old 06-16-2009, 08:20 PM
Peifen Zhang
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Default [Arabidopsis] How to identify a specific metabolic pathway froma list of genes.



Hi Kumar,

Have you tried the "Omics Viewers" tool from AraCyc,
[Only registered users see links. ]. The tool is ideal for
displaying quantitative large-scale omics data, such as gene expression,
on Arabidopsis metabolic pathways. For example, reaction steps of
pathways will be color-coded with up or down- regulated enzyme-coding
genes. It allows you visualize and quickly spot areas of metabolism
responding to a particular experimental condition. A tutorial on the
tool is at [Only registered users see links. ].

You can also use the tool to display a list of genes without
quantitative data, by simply making up/providing any data value (i.e 2)
for all the genes on your input file.

There is also a flat file of AraCyc that you can use to look up
pair-wise info about genes and pathways,
ftp://ftp.arabidopsis.org/home/tair/..._dump.20090311.

Please write back to us ([Only registered users see links. ]) for any questions using
AraCyc.


Regards,
Peifen


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arabidopsis , froma , genes , identify , list , metabolic , pathway , specific


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