[Arabidopsis] How to identify a specific metabolic pathway froma list of genes.
Have you tried the "Omics Viewers" tool from AraCyc, [Only registered users see links. ]. The tool is ideal for
displaying quantitative large-scale omics data, such as gene expression,
on Arabidopsis metabolic pathways. For example, reaction steps of
pathways will be color-coded with up or down- regulated enzyme-coding
genes. It allows you visualize and quickly spot areas of metabolism
responding to a particular experimental condition. A tutorial on the
tool is at [Only registered users see links. ].
You can also use the tool to display a list of genes without
quantitative data, by simply making up/providing any data value (i.e 2)
for all the genes on your input file.