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Cross-species expression viewing at the BAR: Poplar eFP Browser

Cross-species expression viewing at the BAR: Poplar eFP Browser - Arabidopsis and Plant Biology

Cross-species expression viewing at the BAR: Poplar eFP Browser - Discuss Arabidopsis and Plant Biology Research.


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Old 07-22-2008, 06:19 PM
Nicholas Provart
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Default Cross-species expression viewing at the BAR: Poplar eFP Browser



Hello everyone,

Just in time for the 19th ICAR: cross-species expression viewing at the
Bio-Array Resource (BAR)! We have precomputed all orthologs between poplar
and Arabidopsis using OrthoMCL. In the output eFP Browser page for a given
Arabidopsis gene, if there are poplar orthologs then links to a poplar
developmental series eFP Browser are provided, to help with the
identification of the corresponding poplar functional ortholog. We also
provide links to the sequence alignments between a given Arabidopsis gene
and its poplar ortholog(s).

The cross-species feature and the Poplar eFP Browser are available at
htpp://bar.utoronto.ca. The data for the Poplar eFP Browser come from Olivia
Wilkins in the Campbell Laboratory at the University of Toronto, and will be
the subject of a forthcoming publication. Thanks to Hardeep Nahal and Justin
Foong for implementing the Poplar eFP Browser.

Best regards and hope to see you in Montreal!

Nick
..........................................
Nicholas Provart, PhD
Assistant Professor, Plant Bioinformatics & Systems Biology
Director, Graduate Program in Genome Biology and Bioinformatics
Member, Centre for the Analysis of Genome Evolution and Function
Rm 3051, Dept. of Cell and Systems Biology, Uni. Toronto
25 Willcocks St., Toronto, ON. M5S 3B2. CANADA

Tel. (+1) (416) 978-7141, Fax. (+1) (416) 978-5878
URL. [Only registered users see links. ]
Arabidopsis Tools. [Only registered users see links. ]
email. [Only registered users see links. ]
TTC. Spadina LRT, Willcocks St.



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