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Integrated epigenome map browser

Integrated epigenome map browser - Arabidopsis and Plant Biology

Integrated epigenome map browser - Discuss Arabidopsis and Plant Biology Research.


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  #1  
Old 04-17-2008, 11:53 PM
Ryan Lister
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Default Integrated epigenome map browser



To browse the data presented in our publication "Highly Integrated
Single-Base Resolution Maps of the Epigenome in Arabidopsis", Cell
10.1016/j.cell.2008.03.029, we've created a dynamic Web2.0 based
genomic browser called AnnoJ, which is designed to effectively handle
both current and emerging genomic data-types.

The browser displays (from the megabase down to the single base) our
new deep sequencing data sets of Col-0, DNA methyltransferase and
demethylase mutant plants, including:
- MethylC-seq: high-coverage, single-base resolution bisulfite
sequencing DNA methylation data.
- mRNA-seq: strand specific RNA transcript sequencing maps.
- smRNA-seq: deep sequencing of the smRNA component of the
transcriptome.

These data sets are all open access, and to view them in this browser
just go to the URL below with Firefox or Safari:

[Only registered users see links. ]

It has an intuitive interface, just drag and click your way around,
and a tutorial video will be available in the browser menu. If you're
interested in using this browser to display your own data, please
contact the author Julian Tonti-Filippini
([Only registered users see links. ].edu.au), or visit the website ([Only registered users see links. ]
).


Ryan Lister
Human Frontier Postdoctoral Fellow
Plant Biology Laboratory (Ecker)
The Salk Institute for Biological Studies
10010 North Torrey Pines Road
La Jolla, CA 92037
Phone (858) 453-4100 x1777

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  #2  
Old 05-22-2010, 01:44 AM
Pipette Filler
 
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Default Re: Integrated epigenome map browser

my appologies if this is in the wrong place and not in context.

I am a third year biochem student and am looking for definitive differences between the epigenome and the transcriptome. Any help welcome.
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