Go Back   Science Forums Biology Forum Molecular Biology Forum Physics Chemistry Forum > Molecular Research Topics Forum > Animal and Molecular Model Systems > Arabidopsis and Plant Biology
Register Search Today's Posts Mark Forums Read

Arabidopsis and Plant Biology Discuss Arabidopsis and Plant Biology Research.


RE:Searching the Whole Arabidopsis Genome for a Motif

RE:Searching the Whole Arabidopsis Genome for a Motif - Arabidopsis and Plant Biology

RE:Searching the Whole Arabidopsis Genome for a Motif - Discuss Arabidopsis and Plant Biology Research.


Reply
 
LinkBack Thread Tools Display Modes
  #1  
Old 01-05-2008, 03:54 AM
Siobhan A. Braybrook
Guest
 
Posts: n/a
Default RE:Searching the Whole Arabidopsis Genome for a Motif



Dear All,

A while back I posted the following question:

"I am trying to search the whole Arabidopsis genome for a short DNA
sequence, to obtain the genomic co-coordinates for every instance.
I want to search everything, regardless of classification as gene,
intergenic, upstream, etc.
And I would like to get back Chromomsonal nucleotide positions, not
positions relative to an AGI locus number."

So, in response to myself and FYI for anyone out there- THERE WAS NO EASY
WAY TO DO THIS.

I have written a little perl script to do it.
If you have use for it, feel free to contact me.


Siobhan Braybrook


S. A. Braybrook
Graduate Student, Harada Lab
Section of Plant Biology
University of California, Davis
Davis, CA 95616
Ph 530.752.6980

The time is always right, to do what is right.
- Martin Luther King, Jr.
Reply With Quote
Reply

Tags
arabidopsis , genome , motif , researching


Thread Tools
Display Modes

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are On
Pingbacks are On
Refbacks are On

Forum Jump

Similar Threads
Thread Thread Starter Forum Replies Last Post
Human Cytome Project - Update 24 Jan. 2005 Peter Van Osta Cell Biology and Cell Culture 1 08-01-2010 02:18 PM
Human Cytome Project - an idea - Update 19 April 2005 Peter Van Osta Cell Biology and Cell Culture 1 06-01-2009 02:17 PM
Searching the Whole Arabidopsis Genome for a Motif Siobhan A. Braybrook Arabidopsis and Plant Biology 0 04-08-2007 01:28 AM
A Human Cytome Project - an idea - Update 14 March 2005 Peter Van Osta Cell Biology and Cell Culture 0 03-14-2005 02:27 PM
Human Cytome Project - Update 6 Jan. 2005 Peter Van Osta Cell Biology and Cell Culture 0 01-06-2005 11:18 AM


All times are GMT. The time now is 07:12 AM.


Powered by vBulletin® Version 3.8.4
Copyright ©2000 - 2014, Jelsoft Enterprises Ltd.
Copyright 2005 - 2012 Molecular Station | All Rights Reserved
Page generated in 0.16314 seconds with 16 queries