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#1
01-05-2008, 02:54 AM
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 RE:Searching the Whole Arabidopsis Genome for a Motif Dear All, A while back I posted the following question: "I am trying to search the whole Arabidopsis genome for a short DNA sequence, to obtain the genomic co-coordinates for every instance. I want to search everything, regardless of classification as gene, intergenic, upstream, etc. And I would like to get back Chromomsonal nucleotide positions, not positions relative to an AGI locus number." So, in response to myself and FYI for anyone out there- THERE WAS NO EASY WAY TO DO THIS. I have written a little perl script to do it. If you have use for it, feel free to contact me. Siobhan Braybrook S. A. Braybrook Graduate Student, Harada Lab Section of Plant Biology University of California, Davis Davis, CA 95616 Ph 530.752.6980 The time is always right, to do what is right. - Martin Luther King, Jr.  |
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| arabidopsis , genome , motif , researching |
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