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#1
04-08-2007, 01:28 AM
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 Searching the Whole Arabidopsis Genome for a Motif Dear All, I am trying to search the whole Arabidopsis genome for a short DNA sequence, to obtain the genomic co-coordinates for every instance. I want to search everything, regardless of classification as gene, intergenic, upstream, etc. And I would like to get back Chromomsonal nucleotide positions, not positions relative to an AGI locus number. Any ideas? I have tried several approaches at TAIR with some problems: The only way to search the whole genome is via the BAC clones. PatMatch gives you positions relative to AGI loci. Any help is appreciated! Siobhan Braybrook S. A. Braybrook Graduate Student, Harada Lab Section of Plant Biology University of California, Davis Davis, CA 95616 Ph 530.752.6980 The time is always right, to do what is right. - Martin Luther King, Jr.  |
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| arabidopsis , genome , motif , searching |
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