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RegSite-Plant Database of Plant Regulatory Elements: Release 2

RegSite-Plant Database of Plant Regulatory Elements: Release 2 - Arabidopsis and Plant Biology

RegSite-Plant Database of Plant Regulatory Elements: Release 2 - Discuss Arabidopsis and Plant Biology Research.


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Old 08-21-2003, 04:04 PM
softberry@softberry.com
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Default RegSite-Plant Database of Plant Regulatory Elements: Release 2



RegSite-Plant Database of Plant Regulatory Elements: Release 2

Softberry developed RegSite-Plant Database describing Plant regulatory
Elements and programs for searching them and promoter prediction

You can analyze your plant sequence sequence at:

[Only registered users see links. ]

Second RegSite release contains 702 entries and more descriptive fields than
PLACE,
including several fields on expression and some others.

TSSP - Promoter prediction program in plant genomes uses RegSite motifs with
other features.

NSITE-PL Program searching for of plant regulatory motifs from Regsite DB.

An example of RegSite entry is given below. For list of RegSite entries, click
here.

Regsite Plant DB:
AC RSP00001
DT 19-05- 2002 IS
OS Spinach
GS rps1
GF nuclear gene rps1 coding for the spinach plastid ribisomal protein CS1
SN S1F_BS
SD Negative cis-element conserved in plastid-related genes and binding
spinach leaf nuclear factor S1F
DE
BF S1F, spinach leaf nuclear factor
SA Negative; element down-regulating the promoter activity of rps1
SL 5'-end
SP -243:-226
SB 1-box
SC 1-comp
DI
SQ agaatgttaccatgaaa
SS
CS gwwwccatg
AL See: [1]
MA
PT TATA(?)
PS
OR Mature leaves
TI
CE Dark-grown de-differentiated soybean suspension cells
ON
ES Darkness
EC Transient expression in soybean cell protoplasts
MT Oligonucleotide-directed mutagenesis; DNAase I protection and Gel shift
assays
RE [1]
RS JBC
RL 267:23515-23519 (1992)
RA Zhou A-X, Li Y-F, Rocipon M, Mache E
RT Sequence-specific interaction between S1F, a spinach nuclear factor,
and
a negative cis-element conserved in plastid-related genes
CT 2 TSS (Pos. 351, 391); Site position in relation to TSS 2 (pos. 391)
//


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