Go Back   Molecular Biology Forum Life Science Forums > Molecular Research Topics Forum > Molecular Biology Techniques > Agarose Gel Electrophoresis Forum
Register FAQ Members List Calendar Science Groups New! Arcade Search Today's Posts Mark Forums Read

Agarose Gel Electrophoresis Forum Agarose Gel Electrophoresis Forum. A forum to discuss electrophoresis staining, troubleshooting, and development of films for DNA and RNA gels.


agarose Videos
cutting-agarose-dna-bands
cutting-agarose-dna-bands Cutting bands out of gel. Cutting Agarose DNA Bands. Learn how to cut DNA bands out of agarose gels.


DESPERATE, PLEASE HELP!!!! simple gel problem!

DESPERATE, PLEASE HELP!!!! simple gel problem! - Agarose Gel Electrophoresis Forum

DESPERATE, PLEASE HELP!!!! simple gel problem! - Agarose Gel Electrophoresis Forum. A forum to discuss electrophoresis staining, troubleshooting, and development of films for DNA and RNA gels.


Reply
 
LinkBack Thread Tools Display Modes
  #1 (permalink)  
Old 07-15-2009, 03:36 AM
Pipette Filler
Points: 105, Level: 2 Points: 105, Level: 2 Points: 105, Level: 2
Activity: 0% Activity: 0% Activity: 0%
 
Join Date: May 2009
Posts: 1
Thanks: 0
Thanked 0 Times in 0 Posts
dicer RSS Feed
Default DESPERATE, PLEASE HELP!!!! simple gel problem!



i have some problems I am very worried about

I had isolated some RNA and made cDNA, then when i measured the concentration of my cDNA it was insanely high (around 2000 ng/microlitre) but my boss said it was okay and i could go ahead with the PCR, he just told me to dilute it.

so i diluted it with water so that every microliter had about 100 ng. i went ahead and did my PCR.

now on my gel, nothing showed up. i ran it again, this time with a ladder and i also ran my cDNA to see if that would show up.

i ran a 0.8% gel and my ladder was completely streaked through, some bands were kind of visible but not nicely defined, and my cDNA row, there was a clump at the top of the gel, near the well, but it looked like it was streaking too. again, nothing showed up for my PCR samples, but at the very bottom of the gel, past where the dye stain was, there was a clump of stuff visible, for both PCR rows.

my question: is my cDNA streaking because the concentration was too high? this is what i think it was. i put in 2 microliters which was around 4000 ng, that's wrong right? can i use the diluted cDNA (i diluted in water)? if so how much? 100 ng?

and secondly, why is my ladder streaking like that? what can cause a ladder to streak? and how do i fix it?

and thirdly, what is the clump at the bottom of my PCR lanes?!

i am in desperate need of help, please please please help!
Reply With Quote


  #2 (permalink)  
Old 08-07-2009, 03:45 PM
Pipette Filler
Points: 825, Level: 16 Points: 825, Level: 16 Points: 825, Level: 16
Activity: 0% Activity: 0% Activity: 0%
 
Join Date: Jul 2008
Posts: 13
Thanks: 0
Thanked 1 Time in 1 Post
Andriy RSS Feed
Default Re: DESPERATE, PLEASE HELP!!!! simple gel problem!

If your ladder is messed up than it must be a problem with a gel. Just prepare fresh TAE, fresh gel, and run a ladder alone or with a plasmid you know is not degraded.

Once you solve the gel problem, the other ones will either go away themselves or you will be able to define them more clearly
Reply With Quote
  #3 (permalink)  
Old 08-07-2009, 09:23 PM
Aga's Avatar
Aga Aga is online now
Post-Doc
Points: 1,409, Level: 22 Points: 1,409, Level: 22 Points: 1,409, Level: 22
Activity: 5% Activity: 5% Activity: 5%
 
Join Date: Nov 2008
Posts: 226
Thanks: 17
Thanked 51 Times in 45 Posts
Aga RSS Feed
Default Re: DESPERATE, PLEASE HELP!!!! simple gel problem!

Can you show us the photo of your gel so we may have more clear view of the problem and try to help?
Reply With Quote
Reply

Tags
desperate , gel , problem , simple




Thread Tools
Display Modes

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are On
Pingbacks are On
Refbacks are On

Forum Jump

Similar Threads
Thread Thread Starter Forum Replies Last Post
SDS-PAGE problem Steve Nothwehr Protocols and Methods Forum 2 10-16-2009 09:59 AM
Physics Problem - Force Applied to Open a Door (Lever arm problem?)? Rube P Physics Forum 2 06-22-2009 10:18 PM
Simple chemistry problem! -Best answer? rachel Chemistry Forum 0 06-20-2009 04:17 AM
Can you help me with this (probably simple) chemistry problem? Kwertykus Chemistry Forum 1 06-10-2009 08:18 AM
simple problem Dmitri Physics Forum 0 09-07-2003 08:49 PM


All times are GMT. The time now is 11:42 PM.


Powered by vBulletin® Version 3.8.4
Copyright ©2000 - 2009, Jelsoft Enterprises Ltd.
Copyright 2005-2009 Molecular Station | All Rights Reserved