TESS is a web tool for predicting transcription factor binding sites in DNA sequences. It can identify binding sites using site or consensus strings and positional weight matrices from the TRANSFAC, IMD, and our CBIL-GibbsMat database. You may also includ - [Read more TESS : Transcription Element Search System]
OligoAnalyzer tool for oligonucleotide analysis. Includes analysis of hairpins, self-dimerization, hetero-dimerization and other parameter. - [Read more OligoAnalyzer]
Clustal X is a version of the Clustal W multiple sequence alignment program with a graphical interface. The display colours allow conserved features to be highlighted for easy viewing in the alignment. It is available for several platforms, including Wi - [Read more ClustalX]
MatInspector Promoter Analysis Tool. Great Tool for Transcription Factor Analysis of Promoters. Need to register. Limited access to Matrices. - [Read more MatInspector Promoter Analysis Tool.]
Detection of regions of genomic sequences that are rich in the CpG pattern is important because such regions are resistant to methylation and tend to be associated with genes which are frequently switched on. Regions rich in the CpG pattern are known as C - [Read more CpG Plot EMBOSS]
Promoter 2.0 Prediction Server. Promoter2.0 predicts transcription start sites of vertebrate PolII promoters in DNA sequences. It has been developed as an evolution of simulated transcription factors that interact with sequences in promoter regions. It bu - [Read more Promoter 2.0 Prediction Server]
WWW Promoter Scan. Predicts Promoter regions based on scoring homologies with putative eukaryotic Pol II promoter sequences. - [Read more WWW Promoter Scan]
CpGProD is a mammalian-specific software which proposes to identify the promoter regions associated with CpG islands (CGIs). CpGProD uses the structural characteristics of the CGIs associated with promoters (start CGIs). In a first step, CpGProD searches - [Read more CpGProD]
