RNA Structure Predicition and Visualization

CARNAC Server which predicts conserved secondary structure...

DEQOR Tool which aids in the design and quality control of...

ERPIN ERPIN (Easy RNA Profile IdentificatioN) takes as input an...

ILM Server which provides iterated loop matching and maximum...

Kinefold Kinefold calculates (and animates) the folding kinetics...

Mfold Predict RNA secondary structure from sequence; does not...

MolMovDB The Database of Macromolecular Movements (MolMovDB)...

MOLPROBITY MOLPROBITY is a structure analysis and validation program...

PKNOTS Predict pseudoknot structures in RNA sequence; source...

RDfolder A RNA secondary structure prediction program which...

RNAfold Predict RNA secondary structure from sequence; note...

RNAsoft Software for RNA/DNA secondary structure prediction and...

Sfold Server with three tools for the rational design of small...

siDirect Server for computing small interfering RNA (siRNA)...

siRNA Selection Server Server aiding the design of short interfering RNAs...

siRNAdb This resource includes siSearch, AOSearch, and a siRNAdb...

SStructView RNA secondary structure viewer applet; must be integrated...

TROD T7 RNAi Oligo Designer (TROD) aids in the design of DNA...

Vienna RNA Package Comprises a C code library and several stand-alone...