RNA motif search program that identifies RNA motifs called riboswitches which are metabolic binding domains in mRNA that regulate gene expression. The program was originally designed around a set of riboswitches found in Bacillus subtilis. - [Read more Riboswitch finder]
Fast RNA motif/pattern searcher; from the authors: If you re looking for an RNA motif that fits a hard consensus pattern -- a la PROSITE patterns, but with base-pairing -- you might check out RNABOB; not a Web-tool; based on RNAMOT. - [Read more RNABOB]
Transterm is an interactive database providing access to RNA sequences and their associated motifs. The RNA sequences are derived from all gene sequence data in Genbank, including complete genomes, divided into putative 5' and 3' UTRs, initiation and term - [Read more Transterm UTR Motif Search]
