Various tools for protein identification and characterization, similarity searches, pattern and profile searches, post-translational modification prediction, and more. - [Read more ExPASy Proteomics tools]
GELBANK is a database of 2D gel images of proteomes for species with completed genomes. The user can search by sequence description or fragment, or by gel characteristics. Links are made between the sequence and gel when available. - [Read more GELBANK]
The Human Protein Reference Database (HPRD) is a centralized resource for information about human proteins, their interactions with other human proteins, and protein-disease relationships. The information contained in HPRD is curated by experts, who manu - [Read more Human Protein Reference Database]
HUPO Proteomics Standards Initiative (PSI) provides data representation standards to facilitate the exchange, comparison and validation of proteomics data. - [Read more HUPO Proteomics Standards Initiative]
Tools developed to aid in the identification of mass spectrum that allow the calculation of mass values with isotopic distributions based on molecular formulas, peptides/proteins, DNA/RNA, carbohydrate sequences or combinations thereof. A viewer for visu - [Read more ISOTOPICA]
The KEGG Carbohydrate Matcher (KCaM) takes glycan structures as input and returns a list of similar glycan structures using a tree-structure alignment algorithm. - [Read more KCaM]
Protein identification by peptide mass; excellent documentation; incorporates code from MOWSE but allows more search methods on more sequence databases. - [Read more MASCOT (Matrix Science)]
ProMoST (Protein Modification Screening Tool) is a program to calculate accurate MW and pI values from proteins considering the effects of post-translational modifications. Results are displayed as calculated values of pI and MW for each protein and are - [Read more ProMoST]
ProSight PTM allows identification of proteins and their post-translational modifications (PTM) using the mass spectra data from ‘top-down’ fragmentation of intact protein ions (i.e. without any tryptic digestion). - [Read more ProSight PTM]
The Proteome Analysis Database at EBI provides statistical and comparative analyses of the predicted proteomes of organisms for which there are fully-sequenced genomes. - [Read more Proteome Analysis at EBI]
Proteome Analyst is a high-throughput tool for predicting properties for each protein in a proteome. The user provides a proteome in fasta format, and the system employs Psi-blast, Psipred and Modeller to predict protein function and subcellular localiza - [Read more Proteome Analyst]
The Global Proteome Machine (GPM) project facilitates the analysis of proteomes for researchers using tandem mass spectrometry. The aims of the project include providing a common validation and testing platform for results, making the results more portab - [Read more The Global Proteome Machine]
