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| BOMP - http://www.bioinfo.no/tools/bomp The beta-barrel Outer Membrane protein Predictor (BOMP) takes one or more fasta-formatted polypeptide sequences from Gram-negative bacteria as input and predicts whether or not they are beta-barrel integral outer membrane proteins. - [Read more BOMP] |
| ConPred II - http://bioinfo.si.hirosaki-u.ac.jp/~ConPred2/ ConPred II is a tool for predicting transmembrane topology for a user-supplied query sequence. Results are presented in a variety of forms including hydropathy plots. - [Read more ConPred II] |
| PA-SUB - http://www.cs.ualberta.ca/~bioinfo/PA/Sub/ PA-SUB (Proteome Analyst Specialized Subcellular Localization Server) can be used to predict the subcellular localization of proteins using established machine learning techniques. - [Read more PA-SUB] |
| PRED-TMBB - http://bioinformatics.biol.uoa.gr/PRED-TMBB/ PRED-TMBB is a tool that takes a Gram-negative bacteria protein sequence as input and predicts the transmembrane strands and the probability of it being an outer membrane beta-barrel protein. The user has a choice of three different decoding methods. - [Read more PRED-TMBB] |
| PrediSi - http://www.predisi.de/ PrediSi (Prediction of Signal Peptides) takes one or more amino acid sequences as input and predicts the likelihood that they are signal peptides as well as their cleavage positions. It can be used to analyse whole proteome datasets. - [Read more PrediSi] |
| PSIPRED - http://bioinf.cs.ucl.ac.uk/psipred/ An excellent tool for prediction of secondary structure, with access to GenTHREADER for protein fold recognition and MEMSAT-2 transmembrane topology prediction. - [Read more PSIPRED] |
| PSORT.org - http://www.psort.org/ PSORT.org provides links to the PSORT family of web-based programs for subcellular localization prediction, including PSORTb and WoLF PSORT, well as other datasets and resources relevant to localization prediction. - [Read more PSORT.org] |
| PSORTdb - http://db.psort.org/ PSORTdb is a database of proteins of experimentally known (ePSORTdb) and computationally predicted (cPSORTdb) subcellular localization. - [Read more PSORTdb] |
| SAPS - Statistical Analysis of Protein Sequences - http://www.ch.embnet.org/software/SAPS_form.html Calculations include compositional analysis, charge distribution, identification of highly hydrophobic (transmembrane) segments, sequence repeats, and more. - [Read more SAPS - Statistical Analysis of Protein Sequences] |
| SignalP - http://www.cbs.dtu.dk/services/SignalP-2.0/ Prediction of presence and location of signal peptide cleavage sites in amino acid sequences. - [Read more SignalP] |
| TMpred - http://www.ch.embnet.org/software/TMPRED_form.html Prediction of transmembrane regions and their orientation. - [Read more TMpred] |
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