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Protein tertiary structure prediction. 3-D dimensional folding of proteins predicted using bioinformatic online tools and software.
| CD-Search - http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi CD-Search allows the user to search the Conserved Domain Database (CDD) for conserved structural and functional domains in a sequence of interest; links to 3-D structures where applicable. - [Read more CD-Search] |
| Cn3D - http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml Web browser helper application that simultaneously displays 3-D structure, sequence, and alignment. - [Read more Cn3D] |
| MMDB - http://www.ncbi.nlm.nih.gov/Structure/MMDB/mmdb.shtml Molecular Modelling Database of 3-D structures; experimentally determined structures only. - [Read more MMDB] |
| MONSTER - http://monster.northwestern.edu/ MONSTER takes a PDB structure file as input, and predicts non-bonding interactions that have the potential to provide stability to the molecule. The output can be viewed or downloaded as XML or text, or can be viewed as a 3D structure or a 2D diagram. T - [Read more MONSTER] |
| NCBI Structure Group - http://www.ncbi.nlm.nih.gov/Structure/ Good starting point with links to databases and tools. - [Read more NCBI Structure Group] |
| PDB - http://www.rcsb.org/pdb/index.html Protein Data Bank; includes theoretical structures. - [Read more PDB] |
| PPG - http://bioserv.rpbs.jussieu.fr/cgi-bin/PPG The Protein Picture Generator (PPG) is a tool for making pictures (and animations) of protein structures from PDB files. - [Read more PPG] |
| Practical Structural Databases - http://xray.bmc.uu.se/embo/structdb/links.html Detailed compendium of links to structure databases, viewers, tools. - [Read more Practical Structural Databases] |
| RasMol - http://www.bernstein-plus-sons.com/software/rasmol/ 3-D structure viewer, web browser helper application. - [Read more RasMol] |
| YASARA - http://www.yasara.org/ YASARA (Yet Another Scientific Artificial Reality Application) is a software package for visualization, simulation and modeling of molecules. It uses Portable Vector Language (PVL) which allows the visualization of very large proteins. YASARA View is av - [Read more YASARA] |
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