Protein 3-D Structure Retrieval and Vieiwing

CD-Search allows the user to search the Conserved Domain Database (CDD) for conserved structural and functional domains in a sequence of interest; links to 3-D structures where applicable. - [Read more CD-Search]

Web browser helper application that simultaneously displays 3-D structure, sequence, and alignment. - [Read more Cn3D]

Molecular Modelling Database of 3-D structures; experimentally determined structures only. - [Read more MMDB]

MONSTER takes a PDB structure file as input, and predicts non-bonding interactions that have the potential to provide stability to the molecule. The output can be viewed or downloaded as XML or text, or can be viewed as a 3D structure or a 2D diagram. T - [Read more MONSTER]

Good starting point with links to databases and tools. - [Read more NCBI Structure Group]

Protein Data Bank; includes theoretical structures. - [Read more PDB]

The Protein Picture Generator (PPG) is a tool for making pictures (and animations) of protein structures from PDB files. - [Read more PPG]

Detailed compendium of links to structure databases, viewers, tools. - [Read more Practical Structural Databases]

3-D structure viewer, web browser helper application. - [Read more RasMol]

YASARA (Yet Another Scientific Artificial Reality Application) is a software package for visualization, simulation and modeling of molecules. It uses Portable Vector Language (PVL) which allows the visualization of very large proteins. YASARA View is av - [Read more YASARA]