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Prediction of protein 2-D 2-dimensional secondary protein structure and folding. Protein folding bioinformatic tools and software online.
| COILS - http://www.ch.embnet.org/software/COILS_form.html Prediction of coiled coil regions. - [Read more COILS] |
| DICHROWEB - http://public-1.cryst.bbk.ac.uk/cdweb/html/ A server that supports several different algorithms for the analysis of Circular Dichroism (CD) spectra for the prediction of protein secondary structure. Results also contain a graphical comparison of calculated versus experimental results. - [Read more DICHROWEB] |
| DisEMBL - http://dis.embl.de/ A computational tool for prediction of disordered/unstructured regions within a protein sequence. - [Read more DisEMBL] |
| EVA - http://cubic.bioc.columbia.edu/eva/ EValuation of Automatic protein structure prediction; provides a continuous, automated, statistical analysis of structure prediction servers. - [Read more EVA] |
| GlobPlot - http://globplot.embl.de/ Ability to plot the tendency towards globularity for a given protein sequence. Can also perform SMART/Pfam domain prediction - [Read more GlobPlot] |
| iMolTalk - http://i.moltalk.org iMolTalk is a set of tools for protein structure analysis. Users have access to tools to extract information from PDB files, create Ramachandran plots or alpha-carbon distance matrices, align two structures or a sequence to a structure, search for contac - [Read more iMolTalk] |
| JPD - http://trantor.bioc.columbia.edu/SMS/JPD/ Java Protein Dossier (JPD) is part of the STING Suite of web based programs for visualization and analyses of molecular structures. JPD can display many different physicochemical parameters for PDB files as well as for structurally aligned pairs of PDB f - [Read more JPD] |
| PredictProtein - http://www.predictprotein.org PredictProtein is a protein sequence analysis and structure prediction tool. Users provide a protein sequence, and PredictProtein reports similar sequences, PROSITE sequence motifs, and various types of structure prediction information. You can also use - [Read more PredictProtein] |
| PROSPECT-PSPP - http://csbl.bmb.uga.edu/protein_pipeline An automated Protein Structure Prediction Pipeline (PSPP) based on multiple structure prediction tools. A key component of the pipeline is the fold recognition program, PROSPECT. Server supports genome scale analyses. - [Read more PROSPECT-PSPP] |
| PSA - http://bmerc-www.bu.edu/psa/request.htm Prediction of probable secondary structures and fold-class; good for visualizing amphipathic helices, where present. - [Read more PSA] |
| STRIDE - http://webclu.bio.wzw.tum.de/stride/ STRIDE takes a PDB structure as input and reports back either secondary structure assignments, a Ramachandran plot or a contact map. - [Read more STRIDE] |
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