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| Allen Brain Atlas - http://www.brain-map.org/welcome.do The Allen Brain Atlas (ABA) is a web-based application that is designed to aid the expansion of brain science. Designed and developed in collaboration with an acclaimed group of scientists, the ABA enables users to access an extensive database of ISH imag - [Read more Allen Brain Atlas] |
| ASmodeler - http://genome.ewha.ac.kr/ECgene/ASmodeler/ Gene modeling server which focuses on the modeling of alternative splicing. It is based on the alignment of mRNA, EST and protein sequences and combines genome-based clustering and transcript assembly. Supports human, mouse and rat genomes. - [Read more ASmodeler] |
| ECR Browser - http://ecrbrowser.dcode.org/ The ECR (Evolutionary Conserved Regions) browser is a web-based tool for visualizing and navigating through whole genome alignments of several vertebrate species. Users can also submit sequences for alignment with one of the genomes represented. - [Read more ECR Browser] |
| Ensembl Mouse Genome Browser - http://mouse.ensembl.org/ Analysis of finished and draft mouse genomic clone sequences. - [Read more Ensembl Mouse Genome Browser] |
| Ensembl Rat Genome Browser - http://www.ensembl.org/Rattus_norvegicus/ The Rat Genome project is an international collaboration to sequence the genome of the brown rat (Rattus norvegicus). - [Read more Ensembl Rat Genome Browser] |
| FANTOM - Functional Annotation of Mouse - http://www.gsc.riken.go.jp/e/FANTOM/ Functional annotations for RIKEN full-length cDNA clones. - [Read more FANTOM - Functional Annotation of Mouse] |
| Mammalian Gene Collection - http://mgc.nci.nih.gov/ Goal is to provide a complete set of full-length (open reading frame) sequences and cDNA clones of expressed genes for human and mouse; publicly accessible. - [Read more Mammalian Gene Collection] |
| Mouse Atlas of Gene Expression - http://www.mouseatlas.org/ A quantitative and comprehensive atlas of gene expression in mouse development. The project has a goal of producing 150 publically available SAGE libraries. - [Read more Mouse Atlas of Gene Expression] |
| Mouse BAC Ends - http://www.tigr.org/tdb/bac_ends/mouse/bac_end_intro.html TIGR BAC end sequencing project; query genomic sequence or clone name against database of BAC end sequences to find set of minimally overlapping clones; BACs are same as those fingerprinted by Genome Sciences Centre, Vancouver. - [Read more Mouse BAC Ends] |
| Mouse BAC Physical Map - http://www.bcgsc.ca/lab/mapping/mouse BAC fingerprint map of the mouse genome, completed by Genome Sciences Centre, Vancouver. - [Read more Mouse BAC Physical Map] |
| Mouse Genetics: Concepts and Applications - http://www.informatics.jax.org/silver/ Online version of textbook by Lee Silver. - [Read more Mouse Genetics: Concepts and Applications] |
| Mouse Genome Informatics - http://www.informatics.jax.org/ Integrated access to data on mouse genetics, genomics and biology; Jackson Labs. - [Read more Mouse Genome Informatics] |
| Mouse Resources - http://www.nih.gov/science/models/mouse/resources/index.html Linked list of major mouse genome and mutation resources; maintained by the Trans-NIH Mouse Initiative. - [Read more Mouse Resources] |
| Rat BAC Ends - http://www.tigr.org/tdb/bac_ends/rat/bac_end_intro.html TIGR BAC end sequencing project; query genomic sequence or clone name against database of BAC end sequences to find set of minimally overlapping clones; BACs are same as those fingerprinted by Genome Sciences Centre, Vancouver. - [Read more Rat BAC Ends] |
| Rat BAC Physical Map - http://www.bcgsc.ca/lab/mapping/rat BAC fingerprint map of the rat genome, by Genome Sciences Centre, Vancouver. - [Read more Rat BAC Physical Map] |
| Rat Genome Database (RGD) - http://rgd.mcw.edu/ The Rat Genome Database (RGD) is a repository of rat genetic and genomic data. As well as integrating this data with mapping, physiological and strain information, RGD also provides researchers with several tools that facilitate searching, data mining an - [Read more Rat Genome Database (RGD)] |
| TCAG: The Centre for Applied Genomics, Toronto - http://tcag.bioinfo.sickkids.on.ca/ The Centre for Applied Genomics is a Canadian centre for human genome and disease research. Resources include Genomic and cDNA library screening (human, mouse, dog, pig) provided free to Canadian academic researchers with a nominal clone retrieval fee. A - [Read more TCAG: The Centre for Applied Genomics, Toronto] |
| TIGR Gene Indices - http://www.tigr.org/tdb/tgi.shtml An analysis of a set of unique, highly accurate virtual transcripts that are represented in the worlds public EST data; can perform a BLAST search against the TIGR unique Gene Indices. - [Read more TIGR Gene Indices] |
| UCSC Mouse Genome Browser Gateway - http://genome.ucsc.edu/cgi-bin/hgGateway?org=Mouse&db=0&hgsid=27736277 Provides a rapid and reliable display of any requested portion of the mouse genome at any scale, together with dozens of aligned annotation tracks. - [Read more UCSC Mouse Genome Browser Gateway] |
| UCSC Rat Genome Browser Gateway - http://genome.ucsc.edu/cgi-bin/hgGateway?org=Rat&db=0&hgsid=27736277 Provides a rapid and reliable display of any requested portion of the rat genome at any scale, together with dozens of aligned annotation tracks. - [Read more UCSC Rat Genome Browser Gateway] |
| Vega Annotation Browser - http://vega.sanger.ac.uk In collaboration with the genome sequencing centres, Vega attempts to present consistent high-quality curation of finished sequence. - [Read more Vega Annotation Browser] |
| Whole Mouse Catalog - http://www.rodentia.com/wmc/ Numerous links to Internet resources for mouse and rat research; resource categories include genome, cell, organ, organism, laboratory etc. - [Read more Whole Mouse Catalog] |
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