Annotations - Human Genome

Apollo is a genome annotation viewer and editor. Apollo allows researchers to explore genomic annotations at many levels of detail, and to perform expert annotation curation, all in a graphical environment. - [Read more Apollo Genome Annotation and Curation Tool]

This Toolkit is a collection of a wide range of tools and links for sequence analysis, function, and structure prediction. This resource offers convienent web interfaces for many freely available tools. - [Read more Bioinformatics Toolkit]

Website, MySQL server and perl API access to software system which produces and maintains automatic annotation on eukaryotic genomes. - [Read more Ensembl Genome Browser]

FAN (Fingerprint Analysis of Nucleotide sequences) searches nucleotide sequences against the PRINTS database, a collection of protein fingerprints used to assign uncharacterised sequences to known families and hence to infer tentative functions. - [Read more FAN]

The H-Invitational Database (H-InvDB) is a human gene database containing over 20,000 cDNA clusters from multiple high-throughput cDNA sequencing projects. The website provides a genome browser, blast searching, and searching based on information such as - [Read more H-Invitational Database]

Harvester provides fast access to public bioinformatic databases and servers for human proteins. Results are returned as a single HTML page that contains the cached and cross-linked output from the following databases/servers: Uniprot/SWISSprot, ensEMBL, - [Read more Harvester]

Extensive server possessing a wide range of tools for pattern discovery in DNA and protein sequences as well as in text. Tools for multiple sequence alignment, gene discovery, protein annotation, and other applications also exist on this server. A detail - [Read more IBM Bioinformatics and Pattern Discovery Group]

IBM's Bio-Dictionary-based Annotations Of Completed Genomes page lists annotations for over 75 complete genomes (archae, bacteria, eurkaryotes, and viruses). You can query these annotations at the sequence level as well as search/compare across genomes. - [Read more IBM Genome Annotation Page]

The Ensembl EnsMart Genome Browser (MartView) is a tool for data retrieval and data mining that integrates data from Ensembl. Through the web interface MartView allows you to apply a series of filters to create custom datasets which can be converted to s - [Read more MartView]

Downloadable human DNA reference sequence. Annotation of genes and other genomic features will be available for browsing when complete. - [Read more NCBI Human DNA Reference Sequence]

The NCBI Map Viewer provides graphical displays of features on NCBI's assembly of human genomic sequence data as well as cytogenetic, genetic, physical, and radiation hybrid maps. - [Read more NCBI Map Viewer]

Pegasys is a a flexible, modular and customizable software system that coordinates the execution of multiple biological sequence analysis tools and facilitates the integration of their output. The software allows users to create analysis workflows using - [Read more Pegasys: workflow management for bioinformatics]

Desktop tool developed by the NCBI for editing, annotating and submitting DNA sequences to any of the three DNA sequence submission sites (DDBJ, EMBL or GenBank). - [Read more Sequin]

Taverna is a tool for creating and running bioinformatics workflows. - [Read more Taverna]

The Chromosome 7 database is a community-curated project which contains the most up to date collation of sequence, gene, and other annotations from all databases (eg. Celera published, NCBI, Ensembl, RIKEN, UCSC) as well as unpublished data. - [Read more The Chromosome 7 Annotation Project]

Provides a rapid and reliable display of any requested portion of the human genome at any scale, together with dozens of aligned annotation tracks. - [Read more UCSC Human Genome Browser Gateway]

Hands-on tutorial for using genome browsers as web tools for browsing and analyzing data from the Human Genome Project and other sequencing efforts; features UCSC Genome Browser, NCBIs Map Viewer, and Ensembl Genome Browser. - [Read more Users Guide to the Human Genome]

In collaboration with the genome sequencing centres, Vega attempts to present consistent high-quality curation of finished sequence. - [Read more Vega Annotation Browser]