Gene Regulation

ACMES ACMES (Advanced Content Matching Engine for Sequences) is...

BEARR Batch Extraction and Analysis of cis-Regulatory Regions...

BioProspector Server which scans upstream of genes in the same gene...

CARRIE Server which analyzes microarray and promoter sequence...

CompareProspector Server which attempts to identify any motifs related to...

CONFAC The Conserved Transcription Factor Binding Site Finder...

Consite Detect transcription factor binding sites in genomic...

CREME CREME (Cis-Regulatory Module Explorer for the human...

Defining Transcriptional Programs in Vascular Endothelium This website contains microarray analysis software (Argus...

DEQOR Tool which aids in the design and quality control of...

Drosophila DNase I footprint database Database of transcription factor binding sites created...

Eponine Eponine is a probabilistic method for detecting...

FirstEF First Exon Finder (FirstEF) is a 5' terminal exon and...

Gene Regulation Access to databases, programs and papers related to gene...

IBM Bioinformatics and Pattern Discovery Group Extensive server possessing a wide range of tools for...

JASPAR JASPAR is a non-redundant, curated collection of...

MatInspector Search for potential transcription factor binding sites...

MDscan Server designed to pinpoint protein-DNA interaction sites...

MSCAN MSCAN takes as input one or more DNA sequences and a set...

OSU Bioinformatics and Computational Biology The website of the Ohio State University Human Cancer...

POBO A server for the detection, comparison and verification...

PromoterWise Compares two DNA sequences allowing for inversions and...

PROSITE Database of protein families and domains defined from...

PubGene Searchable literature network of human genes with tools...

Riboswitch finder RNA motif search program that identifies RNA motifs...

RiceTFDB RiceTFDB(Rice Transcription Factor DataBase) is a...

rVISTA Server which detects transcription factor binding...

Sfold Server with three tools for the rational design of small...

siRNA Selection Server Server aiding the design of short interfering RNAs...

siRNAdb This resource includes siSearch, AOSearch, and a siRNAdb...