Database for Annotation, Visualization and Integrated Discovery (DAVID) is a web-based tool that provides integrated solutions for the annotation and analysis of genome-scale datasets derived from high-throughput technologies such as microarray and proteo - [Read more DAVID]
BiNGO is a Java-based tool to determine which Gene Ontology (GO) categories are statistically overrepresented in a set of genes or a subgraph of a biological network. - [Read more BiNGO]
Useful for summarizing the predominant biological "theme" of a given gene list. From a list of genes from microarray or other genome-scale experiments, EASE can rapidly calculate over-representation statistics for every possible Gene Ontology term with re - [Read more EASE]
An XML-based Java application is described that provides a function-oriented overview of the results of cluster
analysis of gene-expression microarray data based on Gene
Ontology terms and associations. The application generates one HTML page with listi - [Read more Ontologizing gene-expression microarray data:]
ermineJ is a tool for the analysis of gene sets (user defined or those defined by GO terms) in expression data. The software is designed to be used by biologists with little or no informatics background. A command-line interface is available for users who - [Read more ermineJ]
A program for calculating cluster enrichment analysis and integrated visualization of expression, annotation and transcription factor binding site data using the Gene Ontology. - [Read more CLENCH]
