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DNA microarray and chip bioinformatic software. Analyze DNA array data using online bioinformatics and software tools.
| AMP: Automated Microarray Pipeline - http://www.tm4.org/amp.html The Automated Microarray Pipeline is a series of programs that allow the automated normalization and web publication of microarray data. Data stored in a MADAM-compliant database, like that provided with MADAM, can be automatically downloaded, normalized - [Read more AMP: Automated Microarray Pipeline] |
| DNA Microarray Software - http://rana.lbl.gov/EisenSoftware.htm Michael Eisen's software at Stanford - includes ScanAlyze, Cluster and TreeView. - [Read more DNA Microarray Software] |
| MADAM: MicroArray DAta Manager - http://www.tm4.org/madam.html The Microarray Data Manager, implemented in Java, facilitates the entry of data into a relational database. MADAM guides users through the microarray process from RNA procurement to data analysis, offering intelligent forms to simplify the tracking of exp - [Read more MADAM: MicroArray DAta Manager] |
| MIDAS: Microarray Data Analysis System - http://www.tm4.org/midas.html TIGR’s Microarray Data Analysis System, a Java application, provides users an intuitive interface to design analysis protocols combining one or more normalization and filtering steps. In this way, data from many individual hybridizations can be treated - [Read more MIDAS: Microarray Data Analysis System] |
| Software Utilites for DNA Microarray - http://www.tm4.org/utilities.html Software Utilites for DNA Microarray. ExpressConverter and SlideMap. - [Read more Software Utilites for DNA Microarray] |
| TIGR Multiexperiment Viewer (MeV) - http://www.tm4.org/mev.html Normalized and filtered expression files can be analyzed using TIGR Multiexperiment Viewer (MeV). MeV is a versatile microarray data analysis tool, incorporating sophisticated algorithms for clustering, visualization, classification, statistical analysis - [Read more TIGR Multiexperiment Viewer (MeV)] |
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