DNA Microarray Bioinformatics

DNMAD: Diagnosis and Normalization for MicroArray Data. - [Read more DNMAD]

DragonFamilies is programmed to analyze two sample ratio data that varies around approximately 2-fold differences (i.e. data collected from Incyte microarrays or glass microarrays simultaneously hybridized with Cy3 and Cy5 labeled probes). - [Read more DragonFamilies]

The DragonOrder tool accepts sorted microarray data and displays the location of genes families on that sorted list. The idea behind the DragonOrder tool is similar to that of the DragonFamilies tool. That being that it is beneficial for the user to be - [Read more DragonOrder]

The Dragon Database can be used to annotate differential gene expression data with KEGG numbers and Locuslink numbers. Each KEGG number defines a cellular pathway in which many genes may participate. Based on differential gene expression data provided by - [Read more DragonPaths]

MeSHer is a Java tool for biological literature mining. The program performs a statistical analyis of MeSH (Medical Subject Headings) terms to find over-represented biological themes in a given sample of genes as compared with a larger population of gene - [Read more MeSHer]

Pomelo Tool: A suite for DNA array and Tissue array testing of differential expression (with adjustment for multiple testing). Includes comparisons of two or more groups (t-test and ANOVA), survival analysis (Cox model) and contingency tables (Fisher's ex - [Read more Pomelo Tool (cluster)]

Image analysis software designed for the rapid, reproducible and computer-aided analysis of microarray images and the quantification of gene expression. TIGR Spotfinder reads paired 16-bit TIFF image files generated by most microarray scanners. - [Read more TIGR Spotfinder]