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| AliasServer - http://cbi.labri.fr/outils/alias/ A tool for converting identifiers in which multiple aliases are used to refer to sequences. Also available as a stand-alone tool. - [Read more AliasServer] |
| BankIt - http://www.ncbi.nlm.nih.gov/BankIt/ Web-based submission of one or a few sequences to GenBank. - [Read more BankIt] |
| BioMart - http://www.ebi.ac.uk/biomart/ BioMart is an interactive data integration system facilitating large-scale data queries. It can be installed and used in-house, or with one of the existing data sources to which is has already been applied (ie. UniProt, Ensembl). - [Read more BioMart] |
| BLAST - http://www.ncbi.nlm.nih.gov/BLAST/ Basic Local Alignment Search Tool; retrieve sequences similar to your query. - [Read more BLAST] |
| EMBOSS - http://cbrmain.cbr.nrc.ca/EMBOSS/ Diverse suite of tools for sequence analysis; many programs analagous to GCG; context-sensitive help for each tool. - [Read more EMBOSS] |
| Entrez - http://www.ncbi.nlm.nih.gov/Entrez/index.html NCBI information retrieval system, including GenBank, MMDB (structures), genomes, population sets, OMIM, taxonomy and PubMed. - [Read more Entrez] |
| GeneLynx - http://www.genelynx.org A portal to the human genome. Query by text or BLAST, to access heaps of info from primary and secondary databases of genomic resources, transcripts, protein sequences, function, associated diseases, homologs, ests. - [Read more GeneLynx] |
| GenomeNet - http://www.genome.ad.jp/ Network of database and computational resources including KEGG (pathways, interactions, etc.) and DBGET/LinkDB (an integrated database retrieval system). It also hosts several web-based tools for sequence analysis (ie. Blast, Motif, Clustal W) - [Read more GenomeNet] |
| HGNC: HUGO Gene Nomenclature Committee - http://www.gene.ucl.ac.uk/nomenclature/ The HGNC approves a unique gene name and symbol for each known human gene. The Human Gene Nomenclature Database (Genew) is searchable, and contains all approved symbols. For each symbol, if known, the database associates gene location, aliases, previous - [Read more HGNC: HUGO Gene Nomenclature Committee] |
| MartView - http://www.ensembl.org/Multi/martview The Ensembl EnsMart Genome Browser (MartView) is a tool for data retrieval and data mining that integrates data from Ensembl. Through the web interface MartView allows you to apply a series of filters to create custom datasets which can be converted to s - [Read more MartView] |
| NCBI Human DNA Reference Sequence - http://www.ncbi.nlm.nih.gov/genome/seq/ Downloadable human DNA reference sequence. Annotation of genes and other genomic features will be available for browsing when complete. - [Read more NCBI Human DNA Reference Sequence] |
| PubCrawler - http://pubcrawler.gen.tcd.ie/ It goes to the library. You go to the pub; receive email alerts for current contents of PubMed and GenBank; e.g. use accession number of htg record as query to receive sequence updates (as the version number changes). - [Read more PubCrawler] |
| SAKURA - http://sakura.ddbj.nig.ac.jp/ SAKURA is the DDBJ DNA Database Submission System. - [Read more SAKURA] |
| SeqHound - http://seqhound.blueprint.org/ Seqhound is a sequence retrieval system that provides access to biological sequence, structure and functional annotation data. Seqhound can be accessed via the web interface, through the remote API, or by installing locally. - [Read more SeqHound] |
| Sequin - http://www.ncbi.nlm.nih.gov/Sequin/index.html Desktop tool developed by the NCBI for editing, annotating and submitting DNA sequences to any of the three DNA sequence submission sites (DDBJ, EMBL or GenBank). - [Read more Sequin] |
| SOURCE - http://source.stanford.edu Stanford Online Universal Resource for Clones and ESTs pools publicly available data commonly sought for any clone, GenBank accession, or gene from human, mouse, rat. - [Read more SOURCE] |
| SRS - http://www.cbr.nrc.ca/srs6/ Sequence Retrieval System network browser for multiple molecular databases. - [Read more SRS] |
| Swiss-Shop - http://us.expasy.org/swiss-shop/ Submit sequence, pattern or keywords to receive email alert when new sequences of interest appear in SwissProt. - [Read more Swiss-Shop] |
| WEBIN - http://www.ebi.ac.uk/embl/Submission/webin.html WEBIN is the internet tool for the submission of nucleotide sequences to the EMBL database. It is a service offered by the European Bioinformatics Institute (EBI), an outstation of the European Molecular Biology Laboratory. - [Read more WEBIN] |
| WU BLAST - http://blast.wustl.edu/ Washington University Basic Local Alignment Search Tool - [Read more WU BLAST] |
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