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| Cancer Genome Anatomy Project - http://cgap.nci.nih.gov/ Goal is to determine the gene expression profiles of normal, precancer, and cancer cells; resources for human and mouse include ESTs, gene expression patterns, SNPs, cluster assemblies, cytogenetic information, and tools to query and analyze the data. - [Read more Cancer Genome Anatomy Project] |
| dbSNP - http://www.ncbi.nlm.nih.gov/SNP/ Repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms; NCBI collaboration with NHGRI. - [Read more dbSNP] |
| DNA Methylation Database - http://www.methdb.de/ The database contains information about the occurrence of methylated cytosines in the DNA. - [Read more DNA Methylation Database] |
| HGVbase - http://hgvbase.cgb.ki.se/ Human Genome Variation database - curated; attempt to summarize all known sequence variations in the human genome, to facilitate research into how genotypes affect common diseases, drug responses, and other complex phenotypes. - [Read more HGVbase] |
| International HapMap Project - http://www.nhgri.nih.gov/10001688 The haplotype map, or HapMap, is a tool that will allow researchers to find genes and genetic variations that affect health and disease. - [Read more International HapMap Project] |
| PDA - http://pda.uab.es/ PDA (Pipeline Diversity Analysis) is a server which searches for polymorphic sequences in large databases, and estimates their genetic diversity. Results contain sequence alignments (generated by ClustalW) and include statistics on polymorphism, synonymo - [Read more PDA] |
| PolyBayes - http://genomeold.wustl.edu/groups/informatics/software/polybayes/ UNIX-based SNP discovery from redundant sequences; integrated with Phred/Phrap/Consed infrastructure (see DNA -- Contig Assembly); free for non-commercial use. - [Read more PolyBayes] |
| PolyPhred - http://droog.mbt.washington.edu/PolyPhred.html UNIX-based tool for sequence trace based genotyping; integrated with Phred/Phrap/Consed (see DNA -- Contig Assembly); free for non-commercial use. - [Read more PolyPhred] |
| PupaSNP Finder - http://www.pupasnp.org/ PupaSNP Finder takes a list of genes or chromosomal coordinates (from which it generates a list of genes) as input, and reports SNPs that have the potential to affect phenotype. In addition to looking for potential amino acid changes, PupaSNP also search - [Read more PupaSNP Finder] |
| rSNP_Guide - http://wwwmgs.bionet.nsc.ru/mgs/systems/rsnp/ a system of databases documenting the influence of mutations in regulatory gene regions - [Read more rSNP_Guide] |
| SBT Interface - dbMHC - http://www.ncbi.nlm.nih.gov/mhc/sbt.cgi?cmd=main The SBT (Sequencing-based typing) interface is a tool accompanying the NCBI's Major Histocompatibility Complex database (dbMHC). It identifies the allelic composition of sequence-based typing (SBT) results of cDNA or genomic sequences. Samples are compa - [Read more SBT Interface - dbMHC] |
| SNPbox - http://www.SNPbox.org Tool for large-scale standardized primer design with specific modules for SNP and exon PCR amplification. Results are presented as HTML with genomic position, primer sequence, and PCR conditions. Precomputed SNPbox results for all Ensembl exons are also - [Read more SNPbox] |
| The Mouse SNP Database - http://mouseSNP.roche.com Free access to a database developed by Roche. - [Read more The Mouse SNP Database] |
| The SNP Consortium - http://snp.cshl.org/ Non-profit foundation whose mission is to develop up to 300,000 SNPs distributed evenly throughout the human genome and to make this information available to the public without intellectual property restrictions. - [Read more The SNP Consortium] |
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