Sequence Feature Detection

ACMES ACMES (Advanced Content Matching Engine for Sequences) is...

AlignACE Aligns Nucleic Acid Conserved Elements; uses pattern...

BEARR Batch Extraction and Analysis of cis-Regulatory Regions...

BioMart BioMart is an interactive data integration system...

BioProspector Server which scans upstream of genes in the same gene...

Codon Usage Database Find GC content and frequency of codon usage for any...

CompareProspector Server which attempts to identify any motifs related to...

Consite Detect transcription factor binding sites in genomic...

CREME CREME (Cis-Regulatory Module Explorer for the human...

Drosophila DNase I footprint database Database of transcription factor binding sites created...

eBioinformatics This site provides several bioinformatics software tools...

EMBOSS Diverse suite of tools for sequence analysis; many...

Eponine Eponine is a probabilistic method for detecting...

FAN FAN (Fingerprint Analysis of Nucleotide sequences)...

FirstEF First Exon Finder (FirstEF) is a 5' terminal exon and...

GCUA: Graphical Codon Usage Analyser Graphical representation of codon bias

Gibbs Motif Sampler This tool allows you to identify motifs or conserved...

Harvester Harvester provides fast access to public bioinformatic...

IBM Bioinformatics and Pattern Discovery Group Extensive server possessing a wide range of tools for...

IslandPath IslandPath aids genomic island detection in prokaryotic...

IsoFinder IsoFinder is a tool for the prediction of isochores for a...

JASPAR JASPAR is a non-redundant, curated collection of...

LowComplexity LowComplexity is a tool that searches for low complexity...

MartView The Ensembl EnsMart Genome Browser (MartView) is a tool...

MaskerAid MaskerAid is an enhancement to RepeatMasker which can...

MatInspector Search for potential transcription factor binding sites...

McPromoter The Markov Chain Promoter Prediction Server (McPromoter)...

MDscan Server designed to pinpoint protein-DNA interaction sites...

MEME Analyzes a set of DNA or protein sequences for...

Meta-MEME Creates hidden Markov model of motif from MEME output and...