Phylogenetic Footprinting

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MolecularStation Bioinformatics and Bioinformatic Tools » DNA Bioinformatics » Promoter Analysis Bioinformatics » Phylogenetic Footprinting

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Confac - http://morenolab.whitehead.emory.edu/cgi-bin/confac/login.pl

Conserved Transcription Factor Binding Site Finder - [Read more Confac]

Conreal - http://conreal.niob.knaw.nl/

CONserved Regulatory Elements Anchored aLignment . - [Read more Conreal]

Consite - http://mordor.cgb.ki.se/cgi-bin/CONSITE/consite

Examine transcription factor binding sites that are shared by two genomic sequences. - [Read more Consite]

Footprinter - http://abstract.cs.washington.edu/~blanchem/FootPrinterWeb/FootPrinterInput2.pl

A program designed for phylogenetic footprinting - [Read more Footprinter]

Phylofoot - http://www.phylofoot.org/

Tools for phylogenetic footprinting. - [Read more Phylofoot]

PromH - http://www.softberry.com/berry.phtml?topic=promhg&group=programs&subgroup=promoter

Promoter prediction using ortologous sequences - [Read more PromH]

rVISTA 2.0 - http://rvista.dcode.org/

Finding potential regulatory elements in noncoding regions of the human genome is a challenging problem. Analyzing novel sequences for the presence of known transcription factor binding sites or their weight matrices produces a huge number of false positi - [Read more rVISTA 2.0]

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Phylogenetic Footprinting

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