Promoter Analysis Bioinformatics. Analyze your promoter sequence for transcription factor binding sites, CpG sites and Methylation, and Enhancer elements.
Phylogenetic Footprinting (7)Promoter Databases (9)Promoter Prediction Search Tools (9) | Transcription Factor Binding Element Prediction (9)Transcription Start Site Prediction (6) |
| CpG Island Plot of Promoter Region - http://www.ebi.ac.uk/emboss/cpgplot/ CpG Island Plot of Promoter Region Methylation sites. Bioinformatic Prediction tool. EMBL - [Read more CpG Island Plot of Promoter Region] |
| CpG Island Searcher - http://www.uscnorris.com/cpgislands2/cpg.aspx CpG Island Searcher. The CpG island searcher screens for CpG islands which meet the criteria selected below in submitted DNA sequences. The criteria and algorithm are described by D.T and P.A.J 2002. - [Read more CpG Island Searcher] |
| MatInspector Promoter Analysis Tool. - http://www.genomatix.de/products/MatInspector/index.html MatInspector Promoter Analysis Tool. Great Tool for Transcription Factor Analysis of Promoters. Need to register. Limited access to Matrices. - [Read more MatInspector Promoter Analysis Tool.] |
| Promoter 2.0 Prediction Server - http://www.cbs.dtu.dk/services/Promoter/ Promoter 2.0 Prediction Server. Promoter2.0 predicts transcription start sites of vertebrate PolII promoters in DNA sequences. It has been developed as an evolution of simulated transcription factors that interact with sequences in promoter regions. It bu - [Read more Promoter 2.0 Prediction Server] |
| WWW Promoter Scan - http://bimas.dcrt.nih.gov/molbio/proscan/ WWW Promoter Scan. Predicts Promoter regions based on scoring homologies with putative eukaryotic Pol II promoter sequences. - [Read more WWW Promoter Scan] |
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