Phylogeny Reconstruction

CIPRes The Cyberinfrastructure for Phylogenetic Research...

Codon Usage Database Find GC content and frequency of codon usage for any...

Joes Site - Phylogeny Programs Comprehensive list of phylogeny packages, compiled by Joe...

MEGA MEGA (Molecular Evolutionary Genetics Analysis) is a...

Mesquite Mesquite is an open source software project designed to...

NCBI Taxonomy Database Taxonomic classification of all organisms with sequences...

NJplot NJplot is a tool for visualizing binary trees such as the...

Orthologue Search Service BLAST a protein sequence then perform automated...

PHYLIP Comprehensive set of programs for phylogenetic analyses;...

PhyloBLAST BLAST a protein sequence, then perform automated...

PHYML Phyml is a program that constructs phylogenetic trees...

Puzzleboot Puzzleboot is a UNIX shell script facilitating bootstrap...

Ribosomal Database Project Highly curated database of aligned and annotated rRNA...

Tree of Life Multi-authored project attempting to represent online the...

TREE-PUZZLE Tree-puzzle is a program that constructs phylogenetic...

TreeJuxtaposer TreeJuxtaposer is a free software tool that allows a...

TreeView Generates nice graphics of trees; reads multiple tree...

UCMP Phylogeny Wing "Phylogeny-Diversity of Life Through Time" is an on-line...

Understanding Evolution fantastic site for teaching/understanding evolution

Weighbor Weighbor is a tool for building phylogenetic trees from...