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Gene Prediction Tools, Predicting genes software and online bioinformatics.
| AGenDA - http://bibiserv.techfak.uni-bielefeld.de/agenda/ AGenDA is a web tool that compares the genomic sequences from evolutionarily related organisms in order to make gene predictions. It takes pairs of genomic sequences as input, aligns the sequences, and makes predictions based on splice signals, start and - [Read more AGenDA] |
| AUGUSTUS - http://augustus.gobics.de/submission AUGUSTUS is a eukaryotic gene prediction tool employing a more accurate method for modeling intron length distribution. It is particularly effective with larger sequences. It can be run through a web interface, or downloaded and run locally. - [Read more AUGUSTUS] |
| BLAST - http://www.ncbi.nlm.nih.gov/BLAST/ Basic Local Alignment Search Tool; retrieve sequences similar to your query. - [Read more BLAST] |
| GeneComber - http://bioinformatics.ubc.ca/genecomber/index.php GeneComber is an ab initio gene prediction tool developed at the UBC Bioinformatics Centre. It integrates results from two externally developed gene finders and operates on the premise that if these two gene finders agree on a prediction, we can be more c - [Read more GeneComber] |
| GeneMark - http://opal.biology.gatech.edu/GeneMark/ The GeneMark family of programs employ Markov models and are specifically tuned for gene prediction for sequences from prokaryotes, viral genomes and eukaryotes. - [Read more GeneMark] |
| GenomeScan - http://genes.mit.edu/genomescan.html Incorporates protein similarity information when predicting genes; based in part on GENSCAN. - [Read more GenomeScan] |
| GENSCAN - http://genes.mit.edu/GENSCAN.html Identification of complete gene structures in genomic DNA. - [Read more GENSCAN] |
| Glimmer - http://www.tigr.org/softlab/glimmer/glimmer.html Gene Locator and Interpolated Markov Modeler; this prokaryote-gene finding tool is the primary microbial gene finder used at TIGR; free (including source code) with registration for non-commercial use. - [Read more Glimmer] |
| Grail - http://compbio.ornl.gov/Grail-1.3/ Grail is a suite of tools which recognizes sequence features like promoters, exon candidates, simple repeats and complex repetitive elements. It also models genes based on the exon candidates. - [Read more Grail] |
| HMMgene - http://genome.cbs.dtu.dk/services/HMMgene/ Prediction of vertebrate and C. elegans genes. - [Read more HMMgene] |
| IBM Bioinformatics and Pattern Discovery Group - http://cbcsrv.watson.ibm.com/Tspd.html Extensive server possessing a wide range of tools for pattern discovery in DNA and protein sequences as well as in text. Tools for multiple sequence alignment, gene discovery, protein annotation, and other applications also exist on this server. A detail - [Read more IBM Bioinformatics and Pattern Discovery Group] |
| ORF Finder - http://www.ncbi.nlm.nih.gov/gorf/gorf.html Finds all open reading frames in a sequence. - [Read more ORF Finder] |
| TIGR Software Tools - http://www.tigr.org/software/ A list of open-source software packages available for free from The Institute for Genomic Research (TIGR). - [Read more TIGR Software Tools] |
| Twinscan - http://genes.cs.wustl.edu/ Twinscan is a system for predicting gene-structure in eukaryotic genomic sequences. In order to make its predictions, Twinscan combines the information from predicted coding regions and splice sites with conserservation measurements between the target se - [Read more Twinscan] |
| WU BLAST - http://blast.wustl.edu/ Washington University Basic Local Alignment Search Tool - [Read more WU BLAST] |
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