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| CAP3 Sequence Assembly Program - http://bioweb.pasteur.fr/seqanal/interfaces/cap3.html Web-based contig assembly. - [Read more CAP3 Sequence Assembly Program] |
| FPC - http://www.genome.arizona.edu/software/fpc/ FPC is a tool to assemble contigs from a set of clones and their restriction fragments. - [Read more FPC] |
| Genome Centres and Databases - http://www.ncbi.nlm.nih.gov/genomes/static/links.html Genome centers and databases listed by organism. - [Read more Genome Centres and Databases] |
| Genome Database for Rosaceae - http://www.genome.clemson.edu/gdr/ Genome Database for Rosaceae (GDR) contains all publically available Rosaceae sequences including annotated peach, strawberry and almond EST sequences and the genetically anchored peach physical map. - [Read more Genome Database for Rosaceae] |
| iCE - internet Contig Explorer - http://ice.bcgsc.bc.ca/ Viewer for physical map data (for mouse, rat, cow, Cryptococcus); developed at the Genome Sciences Centre, Vancouver. - [Read more iCE - internet Contig Explorer] |
| NCBI Clone Registry - http://www.ncbi.nlm.nih.gov/genome/clone/ A database that integrates information about genomic clones and libraries, including sequence data, genomic position, and distributor information. - [Read more NCBI Clone Registry] |
| Phred/Phrap/Consed System - http://www.phrap.org/ UNIX-based, base-calling, sequence assembly and finishing tools used by most genome sequence centres; free for non-commercial use. - [Read more Phred/Phrap/Consed System] |
| Staden Package - http://www.mrc-lmb.cam.ac.uk/pubseq/ UNIX-based tools for sequence assembly, mutation detection and sequence analysis; free for non-commercial use. Note that Staden development and support have ceased due to lack of funding, despite widespread use. - [Read more Staden Package] |
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