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Clone repositories, expression data and tools for cDNA and Expressed Sequence Tags (EST) and Serial Analysis of Gene Expression (SAGE).
| ACID - http://bioinfo.thep.lu.se/acid.html The Array Clone Information Database (ACID) is a searchable resource for information about human, mouse, and rat cDNA clones. Each clone contains information about the assigned UniGene cluster(s), location in the full-length transcript, assigned gene ont - [Read more ACID] |
| Allen Brain Atlas - http://www.brain-map.org The Allen Brain Atlas (ABA) project has developed a web-based application designed to aid the intersection of neuroscience and genomics. The ABA Application enables users to access an extensive database of high resolution in situ hybridization (ISH) image - [Read more Allen Brain Atlas] |
| Cancer Genome Anatomy Project - http://cgap.nci.nih.gov/ Goal is to determine the gene expression profiles of normal, precancer, and cancer cells; resources for human and mouse include ESTs, gene expression patterns, SNPs, cluster assemblies, cytogenetic information, and tools to query and analyze the data. - [Read more Cancer Genome Anatomy Project] |
| CloneRanger™ Search all Invitrogen Clone Collections - http://clones.invitrogen.com/cloneranger.php BLAST search all of Invitrogen’s clone collections at once using CloneRanger™ - [Read more CloneRanger™ Search all Invitrogen Clone Collections] |
| E2G - http://bibiserv.techfak.uni-bielefeld.de/e2g/ E2G is a tool that maps a large set of EST and cDNA sequences to a user-supplied genomic sequence. The use of pre-computed indexed data structures increases the efficiency of the sequence comparison process, allowing a large amount of data to be mapped w - [Read more E2G] |
| Genome Database for Rosaceae - http://www.genome.clemson.edu/gdr/ Genome Database for Rosaceae (GDR) contains all publically available Rosaceae sequences including annotated peach, strawberry and almond EST sequences and the genetically anchored peach physical map. - [Read more Genome Database for Rosaceae] |
| GEO - Gene Expression Omnibus - http://www.ncbi.nlm.nih.gov/geo/ Gene expression and hybridization array data repository; online resource for retrieval of gene expression data from any organism or artificial source. - [Read more GEO - Gene Expression Omnibus] |
| GOAL - http://microarrays.unife.it/ Gene Ontology Automated Lexicon (GOAL) is a tool for the functional analysis of data from SAGE and microarray experiments. Gene Ontology terms are used as the basis for statistical analysis. - [Read more GOAL] |
| Mammalian Gene Collection - http://mgc.nci.nih.gov/ Goal is to provide a complete set of full-length (open reading frame) sequences and cDNA clones of expressed genes for human and mouse; publicly accessible. - [Read more Mammalian Gene Collection] |
| Mouse Atlas of Gene Expression - http://www.mouseatlas.org/ A quantitative and comprehensive atlas of gene expression in mouse development. The project has a goal of producing 150 publically available SAGE libraries. - [Read more Mouse Atlas of Gene Expression] |
| QPPD - http://web.ncifcrf.gov/rtp/GEL/primerdb/default.asp QPPD (Quantitative PCR Primer Database) contains information about primer sets published for quantitative PCR assays. This database can be searched by gene name, keyword, or by identifier. Results return primer sequences, graphics showing the primer loc - [Read more QPPD] |
| SAGE Home Page - http://www.sagenet.org/ Serial Analysis of Gene Expression; simultaneous expression and map information. - [Read more SAGE Home Page] |
| SAGEmap - http://www.ncbi.nlm.nih.gov/SAGE/index.cgi SAGE tag to gene mapping by NCBI. - [Read more SAGEmap] |
| SOURCE - http://source.stanford.edu Stanford Online Universal Resource for Clones and ESTs pools publicly available data commonly sought for any clone, GenBank accession, or gene from human, mouse, rat. - [Read more SOURCE] |
| TCAG: The Centre for Applied Genomics, Toronto - http://tcag.bioinfo.sickkids.on.ca/ The Centre for Applied Genomics is a Canadian centre for human genome and disease research. Resources include Genomic and cDNA library screening (human, mouse, dog, pig) provided free to Canadian academic researchers with a nominal clone retrieval fee. A - [Read more TCAG: The Centre for Applied Genomics, Toronto] |
| TIGR Gene Indices - http://www.tigr.org/tdb/tgi.shtml An analysis of a set of unique, highly accurate virtual transcripts that are represented in the worlds public EST data; can perform a BLAST search against the TIGR unique Gene Indices. - [Read more TIGR Gene Indices] |
| UniGene - http://www.ncbi.nlm.nih.gov/UniGene/ Non-redundant sets of expressed genes; each UniGene cluster contains sequences, model organism homologs, map and expression information. - [Read more UniGene] |
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